If you're getting any brake pulsation it could be a bad rotor. My 2003, with 18 K miles needs a new left rotor because of thickness variations.
Measuring the thickness at several points, the rotor varies in thickness by about 0.0015". Floating rotors as on the Bandit don't usually have this happen and my mileage is easy, touring mileage, so I'm figuring bad metal in the disk.
In my experience the non-floating, double sided piston calipers respond to this variation and deliver pulsation back to the rider more often than the floating type calipers. They can't follow the variations as a floating caliper can.
Run out is within tolerance, but the thickness variation should be less than 0.0005" -- at least that's what we try for on car rotors when maching them. At about 0.001" you can start to feel the pulsations in a car -- at 0.0015 it becomes pronounced, and virtually undriveable at 0.002"
I'm going to try EBC Pro-Lite rotors as they're cheaper than the Suzuki parts, $167 vs. $244 each. I'm replacing both as I want them to look the same.
Brake pads are less than half worn at 18 K so they'll be replaced later.
Ron Ayers had the best price I could find, Dennis Kirk the highest at $189.