I "usually" change the filter every time, as it is fairly cheap. But, I have left the filter on through 2 oil changes (10,000 kms).
If I leave the filter on, I still drain the oil from it and reinstall, after checking the gasket. I also drain the oil cooler every time. My oil changes are just under 4 litres, new or old filter.
Anyway, if Suzuki says the filter is good for two changes, who am I to argue. Go for it.