I have a 98 12S which ran poorly with a Yoshi slip on. I went to one dealer who said I needed a jet kit for $275Cdn + labor. I asked him if he had ever put one in & configured it. Nope.
I went to another dealer, (larger), and asked the same questions. He said if I bought a jet kit he would give me most of the parts back after instal. He said you didn't realy need the kit unless you were going the more radical route, ie GSXR cams, piston kit and or timing changes etc.
He proposed & did a milder route. I decided to do it when I asked him how many of these they had done and it was at least ten.
I believe he raised the main jet needle a notch. He did drill out the low speed jet covers and richen these. I spent the same on labor and it runs beautifly from 1500 rpms up. I did not detect any significant change in mileage.
He said all bikes are set very lean for emissions and the slip makes it worse. Good luck.
Mike