Ok, just a little update. I spoke with my uncle, who's an electrical engineer, this evening.
I asked him about voltage and temperature ratings, and he says that all circuit boards are essentially the same. He says that on "high-tech" devices such as the CDI unit, one can substitute higher voltage and higher temperature ratings for lower ones. With the exception of circuit boards on which the capacitor doubles as a voltage regulator, which is a cheap and unreliable way of designing a circuit, he says that that if you can get the higher rated capacitors to fit, they will hold up longer. A higher temperature rating just means that the dielectric inside the capacitor is better. Capacitors are relatively inexpensive, but I guess it affects the bottom line when you're mass producing them, hence Suzuki uses these lower rated caps.
In lieu of the stock ratings, I'll wind up using these other ones I found:
Stock: Replacement
10UF/50V/105C same
47uF/35V/85C 47uF/35V/105C
10uF/25V/85C 10uF/25V/105C
You can also use the 10uF50V capacitor in place of the 10uF25V capacitor.
Also, he would have suspected the transistors (on the two heat sinks) burned out before the caps so apparently, the latter is a relatively uncommon occurrence.