Inline 4's have a natural secondary vibration that cant be helped.Thats why most larger 4 bangers (over 2.0L) will have a balance shaft or two.Smaller engines have less mass and the vibration can usually be tamed with mounting and chassis modifications during the design phase.
Both my bikes are 4 bangers and both have stressed member engines.....and they both have their little buzzes.The big FZR is much less noticable though since I still have all the rubber isolators on the pegs,forks and clip-ons.The Bandit's buzz is not very intrusive since its such a small engine,but its noticable due to the solid mount bars and pegs.
As stated,check your tank,engine/chassis bolts,suspension pickup points,head bearings,wheel bearings,kick/center stands,ect......anything that can move and vibrate,will have a resonance at some RPM/MPH.......