A lot of people will say, "No, not if they look OK", but it's still a pretty darned good idea. Besides, you have the bike apart already, might as well hump that cylinder block over to a machinist!
I'd really recommend taking a good hard look at the heads too, check the combustion chambers and valves for signs of carbon buildup and burning.
Just out of curiousity, where was the head gasket blown? Looking at the pics in my manual, it doesn't look like there are oil passages in the block other than the valve chain passage.
If you got the dough, you should see if GSXRRacer has anymore of those GSXR400 cams that bolt right on.