Perhaps.
I admit, I don't spend much time at M-S anymore, so maybe there's more recent info over there, but from what I have read and talked to other Banditos, the typical Bandit shake comes from tire cupping. Tire cupping can be caused from a number of things, as has already been mentioned, but I don't think I've ever heard anyone say a Mac90 never cupped on them - and I darn sure don't know of any Bandit owners that have said that. The vast majority of 90's cupped very early - on B12's at like 500-1500 miles. For a sport-touring tire to cup that early - and only with that tire - sure makes me think it's the tire. Plenty of people have put a lot of miles on a lot of other kinds of tires with little or no cupping. Like I said, my 010 didn't cup until it had 9000 miles on it and it was within 500 miles of being worn out by then anyway, so I wouldn't hold that against Bridgestone. I wore out a Pilot Road with no cupping after 10,000 miles and I'm about halfway thru my second PR and it's doing as good as the first. If it was a bike problem, wouldn't it only get worse as the bike got older? Funny how my bike cupped tires at 500 miles, but doesn't cup them anymore with 40,000 - and I've never even pulled the head apart to apply fresh grease.
The 2G B12 does have more aggressive geometry than the 1G, so it has a greater potential for headshake. Usually, this doesn't come into play unless the geometry gets altered even more (Busa shock, raised forks, 60 series front tire), the rider rides at the edge of the envelope a lot, or maintenance is ignored. It's certainly not an issue people come in here and complain about all the time.