I took apart my B6, when I had it, for an engine swap. This past weekend I just helped a buddy take apart his FZR to help rebuild his engine, so I know a little bit about this process.
I think a service manual (which should have all the torque settings), a torque wrench, and a bucket of loctite are the basics for this job. Also, having a buddy for a second pair of eyes is always a good thing, especially when you're putting the bike back together again--which is the most time consuming part of the whole the process because of lining the engine back up to the frame, torquing bolts down to specs, and then putting the wiring harness back on. Just be careful not to overtighten things so as not to mess up the engine block.